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Research Computing Documentation

Using Workflow Managers

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Research Computing Documentation

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Account Management
Account Management
- Cheaha Account
- External Collaborator Accounts (XIAS)
  External Collaborator Accounts (XIAS)
- Gitlab Account
Data Management
Data Management
- Cheaha Storage
- Storage Alternatives
- Long Term Storage
  Long Term Storage
  - Tutorial
    
    Tutorial
    
    LTS and s3cmd Workflow
  - Interfacing with LTS
  - Bucket Permissions
  - UAB Core Accounts
  - FAQ
- Transfer
  Transfer
  - Tutorial
    
    Tutorial
    
    Globus for Individuals
    
    Globus for Groups
  - Globus
  - RClone
  - FileZilla
- Code Storage
Workflow Solutions
Workflow Solutions
- Using the Shell
- Using Anaconda
- Using Workflow Managers Using Workflow Managers
  Table of contents
- Using Git
- R Projects and Environments
- Software Containers
- Software Collaboration with GitHub and GitLab
Cheaha Guide
Cheaha Guide
- Getting Started
- Tutorials
  Tutorials
  - Anaconda Environment Tutorial
- Cheaha Web Portal
  Cheaha Web Portal
- Hardware
- Software
  Software
  - Pre-installed Modules
  - Self-Installed Software
- SLURM
  SLURM
- Job Efficiency
UAB Cloud (cloud.rc) Guide
UAB Cloud (cloud.rc) Guide
UAB Kubernetes Guide
UAB Kubernetes Guide
- Startup
National Research Computing Cyberinfrastructure
National Research Computing Cyberinfrastructure
Grants & Contracts
Grants & Contracts
Outreach & Training
Outreach & Training
- Case Studies
- Research Computing Days
  Research Computing Days
- Offered Courses
- Training Resources
Policies
Reporting Documentation Errors
Contributing Content
Help
Help
- Support
- FAQ - Frequently Asked Questions

Table of contents

Snakemake
Pegasus
Nextflow

Workflow Managers¶

Construction

This page is a stub and is under construction.

Snakemake¶

Pegasus¶

Nextflow¶

June 9, 2022

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